A class-wide phylogenetic assessment of Dothideomycetes

C.L. Schoch; P.W. Crous; J.Z. Groenewald; E.W.A. Boehm; T.I. Burgess; J. de Gruyter; G.S. de Hoog; L.J. Dixon; M. Grube; C. Gueidan; Y. Harada; S. Hatakeyama; K. Hirayama; T. Hosoya; S.M. Huhndorf; K.D. Hyde; E.B.G. Jones; J. Kohlmeyer; Å. Kruys; Y.M. Li; R. Lücking; H.T. Lumbsch; L. Marvanová; J.S. Mbatchou; A.H. McVay; A.N. Miller; G.K. Mugambi; L. Muggia; M.P. Nelsen; P. Nelson; C.A. Owensby; A.J.L. Phillips; S. Phongpaichit; S.B. Pointing; V. Pujade-Renaud; H.A. Raja; E. Rivas Plata; B. Robbertse; C. Ruibal; J. Sakayaroj; T. Sano; L. Selbmann; C.A. Shearer; T. Shirouzu; B. Slippers; S. Suetrong; K. Tanaka; B. Volkmann-Kohlmeyer; M.J. Wingfield; A.R. Wood; J.H.C. Woudenberg; H. Yonezawa; Y. Zhang; J.W. Spatafora

doi:10.3114/sim.2009.64.01

Back

A class-wide phylogenetic assessment of Dothideomycetes

Journal article

Open access

Peer reviewed

A class-wide phylogenetic assessment of Dothideomycetes

C.L. Schoch, P.W. Crous, J.Z. Groenewald, E.W.A. Boehm, T.I. Burgess, J. de Gruyter, G.S. de Hoog, L.J. Dixon, M. Grube, C. Gueidan, …

Studies in mycology, Vol.64(1), pp.1-15

01/01/2009

DOI: https://doi.org/10.3114/sim.2009.64.01

PMCID: PMC2816964

PMID: 20169021

Abstract

Ascomycota

Dothideomyceta

fungal evolution

lichens

multigene phylogeny

Pezizomycotina

phylogenomics

plant pathogens

saprobes

Tree of Life

We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon.

Files and links (1)

url

https://doi.org/10.3114/sim.2009.64.01View

Published (Version of record) Open

Metrics

1 Record Views

See more details

Details

Title: A class-wide phylogenetic assessment of Dothideomycetes
Creators - without role: C.L. Schoch - National Center for Biotechnology Information
P.W. Crous - Canadian Bio-Systems
J.Z. Groenewald - Canadian Bio-Systems
E.W.A. Boehm - Kean University
T.I. Burgess - Murdoch University
J. de Gruyter - Canadian Bio-Systems
G.S. de Hoog - Canadian Bio-Systems
L.J. Dixon - Systematic
M. Grube - University of Graz
C. Gueidan - Canadian Bio-Systems
Y. Harada - Hirosaki University
S. Hatakeyama - Hirosaki University
K. Hirayama - Hirosaki University
T. Hosoya - National Museum of Nature and Science
S.M. Huhndorf - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
K.D. Hyde - Mae Fah Luang University
E.B.G. Jones - National Center for Genetic Engineering and Biotechnology
J. Kohlmeyer - University of North Carolina at Chapel Hill
Å. Kruys - Uppsala University
Y.M. Li - Research Institute of Resource Insects
R. Lücking - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
H.T. Lumbsch - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
L. Marvanová - Masaryk University
J.S. Mbatchou - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
A.H. McVay - Oregon State University
A.N. Miller - University of Illinois Urbana-Champaign
G.K. Mugambi - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
L. Muggia - University of Graz
M.P. Nelsen - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
P. Nelson - University of Minnesota
C.A. Owensby - Oregon State University
A.J.L. Phillips - Universidade Nova de Lisboa
S. Phongpaichit - Prince of Songkla University
S.B. Pointing - University of Hong Kong
V. Pujade-Renaud - CIRAD/PIAF, Université Blaise Pascal, Bâtiment Biologie Végétale Recherche, 24 avenue des Landais, BP 80026, 63177 Aubière, France
H.A. Raja - University of Illinois Urbana-Champaign
E. Rivas Plata - Department of Botany, The Field Museum, 1400 South Lake Shore Drive, Chicago, Illinois 60605-2496, U.S.A
B. Robbertse - National Center for Biotechnology Information
C. Ruibal - Ciencia
J. Sakayaroj - National Center for Genetic Engineering and Biotechnology
T. Sano - Hirosaki University
L. Selbmann - Studi
C.A. Shearer - University of Illinois Urbana-Champaign
T. Shirouzu - Tottori University
B. Slippers - University of Pretoria
S. Suetrong - National Center for Genetic Engineering and Biotechnology
K. Tanaka - Hirosaki University
B. Volkmann-Kohlmeyer - University of North Carolina at Chapel Hill
M.J. Wingfield - University of Pretoria
A.R. Wood - Wisconsin Disability Association
J.H.C. Woudenberg - Canadian Bio-Systems
H. Yonezawa - Hirosaki University
Y. Zhang - University of Hong Kong
J.W. Spatafora - Oregon State University
Publication Details: Studies in mycology, Vol.64(1), pp.1-15
Publisher: Elsevier B.V
Identifiers: 9951252108331
Academic Unit: King Saud University
Language: English
Resource Type: Journal article