Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Bryndan P. Durham; Jana Grote; Kerry A. Whittaker; Sara J. Bender; Haiwei Luo; Sharon L. Grim; Julia M. Brown; John R. Casey; Antony Dron; Lennin Florez-Leiva; Andreas Krupke; Catherine M. Luria; Aric H. Mine; Olivia D. Nigro; Santhiska Pather; Agathe Talarmin; Emma K. Wear; Thomas S. Weber; Jesse M. Wilson; Matthew J. Church; Edward F. DeLong; David M. Karl; Grieg F. Steward; John M. Eppley; Nikos C. Kyrpides; Stephan Schuster; Michael S. Rappé; USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)

doi:10.4056/sigs.4998989

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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

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Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome

Bryndan P. Durham, Jana Grote, Kerry A. Whittaker, Sara J. Bender, Haiwei Luo, Sharon L. Grim, Julia M. Brown, John R. Casey, Antony Dron, Lennin Florez-Leiva, …

Standards in genomic sciences, Vol.9(3), pp.632-645

15/06/2014

DOI: https://doi.org/10.4056/sigs.4998989

PMCID: PMC4148974

PMID: 25197450

Abstract

aerobic anoxygenic phototroph

dimethylsulfoniopropionate

marine bacterioplankton

Roseobacter

Short Genome Reports

Strain HIMB11 is a planktonic marine bacterium isolated from coastal seawater in Kaneohe Bay, Oahu, Hawaii belonging to the ubiquitous and versatile Roseobacter clade of the alphaproteobacterial family Rhodobacteraceae . Here we describe the preliminary characteristics of strain HIMB11, including annotation of the draft genome sequence and comparative genomic analysis with other members of the Roseobacter lineage. The 3,098,747 bp draft genome is arranged in 34 contigs and contains 3,183 protein-coding genes and 54 RNA genes. Phylogenomic and 16S rRNA gene analyses indicate that HIMB11 represents a unique sublineage within the Roseobacter clade. Comparison with other publicly available genome sequences from members of the Roseobacter lineage reveals that strain HIMB11 has the genomic potential to utilize a wide variety of energy sources (e.g. organic matter, reduced inorganic sulfur, light, carbon monoxide), while possessing a reduced number of substrate transporters.

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Title: Draft genome sequence of marine alphaproteobacterial strain HIMB11, the first cultivated representative of a unique lineage within the Roseobacter clade possessing an unusually small genome
Creators - without role: Bryndan P. Durham - University of Hawaii System
Jana Grote - University of Hawaii System
Kerry A. Whittaker - University of Rhode Island
Sara J. Bender - University of Hawaii System
Haiwei Luo - Department of Marine Sciences, University of Georgia, Athens, Georgia
Sharon L. Grim - University of Hawaii System
Julia M. Brown - Cornell University
John R. Casey - University of Hawaii System
Antony Dron - University of Hawaii System
Lennin Florez-Leiva - University of Hawaii System
Andreas Krupke - University of Hawaii System
Catherine M. Luria - University of Hawaii System
Aric H. Mine - University of Hawaii System
Olivia D. Nigro - University of Hawaii System
Santhiska Pather - University of Massachusetts Dartmouth
Agathe Talarmin - University of California, Irvine
Emma K. Wear - University of California, Santa Barbara
Thomas S. Weber - University of California, Los Angeles
Jesse M. Wilson - University of California, Merced
Matthew J. Church - University of Hawaii System
Edward F. DeLong - University of Hawaii System
David M. Karl - University of Hawaii System
Grieg F. Steward - University of Hawaii System
John M. Eppley - University of Hawaii System
Nikos C. Kyrpides - University of Hawaii System
Stephan Schuster - University of Hawaii System
Michael S. Rappé - University of Hawaii System
USDOE Joint Genome Institute (JGI), Berkeley, CA (United States)
Publication Details: Standards in genomic sciences, Vol.9(3), pp.632-645
Publisher: Michigan State University
Grant note: University of Hawaii and Manoa School of Ocean and Earth Science and Technology Agouron Institute, the Gordon and Betty Moore Foundation SOEST Gordon and Betty Moore Foundation Center for Microbial Oceanography EF0424599 / National Science Foundation-funded Science and Technology Center
Identifiers: 9941842308331
Academic Unit: King Abdullah University of Science & Technology
Language: English
Resource Type: Journal article