Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer; Karl G. Kugler; Simen R. Sandve; Bujie Zhan; Heidi Rudi; Torgeir R. Hvidsten; Klaus F. X. Mayer; Odd-Arne Olsen; Jane Rogers; Jaroslav Dolezel; Curtis Pozniak; Kellye Eversole; Catherine Feuillet; Bikram Gill; Bernd Friebe; Adam J. Lukaszewski; Pierre Sourdille; Takashi R. Endo; Marie Kubalakova; Jarmila Cihalikova; Zdenka Dubska; Jan Vrana; Romana Sperkova; Hana Simkova; Melanie Febrer; Leah Clissold; Kirsten McLay; Kuldeep Singh; Parveen Chhuneja; Nagendra K. Singh; Jitendra Khurana; Eduard Akhunov; Frederic Choulet; Adriana Alberti; Valerie Barbe; Patrick Wincker; Hiroyuki Kanamori; Fuminori Kobayashi; Takeshi Itoh; Takashi Matsumoto; Hiroaki Sakai; Tsuyoshi Tanaka; Jianzhong Wu; Yasunari Ogihara; Hirokazu Handa; P. Ron Maclachlan; Andrew Sharpe; Darrin Klassen; David Edwards; Jacqueline Batley; Sigbjorn Lien; Burkhard Steuernagel; Brande Wulff; Mario Caccamo; Sarah Ayling; Ricardo H. Ramirez-Gonzalez; Bernardo J. Clavijo; Jonathan Wright; Manuel Spannagl; Mihaela M. Martis; Martin Mascher; Jarrod Chapman; Jesse A. Poland; Uwe Scholz; Kerrie Barry; Robbie Waugh; Daniel S. Rokhsar; Gary J. Muehlbauer; Nils Stein; Heidrun Gundlach; Matthias Zytnicki; Veronique Jamilloux; Hadi Quesneville; Thomas Wicker; Primetta Faccioli; Moreno Colaiacovo; Antonio Michele Stanca; Hikmet Budak; Luigi Cattivelli; Natasha Glover; Lise Pingault; Etienne Paux; Sapna Sharma; Rudi Appels; Matthew Bellgard; Brett Chapman; Thomas Nussbaumer; Kai Christian Bader; Helene Rimbert; Shichen Wang; Ron Knox; Andrzej Kilian; Michael Alaux; Francoise Alfama; Loic Couderc; Nicolas Guilhot; Claire Viseux; Mikael Loaec; Beat Keller; Sebastien Praud; Int Wheat Genome Sequencing

doi:10.1126/science.1250091

Back

Genome interplay in the grain transcriptome of hexaploid bread wheat

Journal article

Peer reviewed

Genome interplay in the grain transcriptome of hexaploid bread wheat

Matthias Pfeifer, Karl G. Kugler, Simen R. Sandve, Bujie Zhan, Heidi Rudi, Torgeir R. Hvidsten, Klaus F. X. Mayer, Odd-Arne Olsen, Jane Rogers, Jaroslav Dolezel, …

Science (American Association for the Advancement of Science), Vol.345(6194), pp.1250091-1250091

18/07/2014

DOI: https://doi.org/10.1126/science.1250091

PMID: 25035498

Abstract

Multidisciplinary Sciences

Science & Technology

Science & Technology - Other Topics

Allohexaploid bread wheat (Triticum aestivum L.) provides approximately 20% of calories consumed by humans. Lack of genome sequence for the three homeologous and highly similar bread wheat genomes (A, B, and D) has impeded expression analysis of the grain transcriptome. We used previously unknown genome information to analyze the cell type-specific expression of homeologous genes in the developing wheat grain and identified distinct co-expression clusters reflecting the spatiotemporal progression during endosperm development. We observed no global but cell type-and stage-dependent genome dominance, organization of the wheat genome into transcriptionally active chromosomal regions, and asymmetric expression in gene families related to baking quality. Our findings give insight into the transcriptional dynamics and genome interplay among individual grain cell types in a polyploid cereal genome.

Metrics

1 Record Views

See more details

Details

Title: Genome interplay in the grain transcriptome of hexaploid bread wheat
Creators - without role: Matthias Pfeifer - Helmholtz Zentrum München
Karl G. Kugler - Helmholtz Zentrum München
Simen R. Sandve - Norwegian University of Life Sciences
Bujie Zhan - Plant
Heidi Rudi - Norwegian University of Life Sciences
Torgeir R. Hvidsten - NMBU, Dept Chem Biotechnol & Food Sci, N-1432 As, Norway
Klaus F. X. Mayer - Helmholtz Ctr Munich, D-85764 Neuherberg, Germany
Odd-Arne Olsen - Norwegian University of Life Sciences
Jane Rogers - Eversole Associates
Jaroslav Dolezel - Plant
Curtis Pozniak - University of Saskatchewan
Kellye Eversole - Eversole Associates
Catherine Feuillet - Bayer Crop Sci, 3500 Paramount Pkwy, Morrisville, NC 27560 USA
Bikram Gill - Kansas State University
Bernd Friebe - Kansas State University
Adam J. Lukaszewski - Plant
Pierre Sourdille - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Takashi R. Endo - Kyoto University
Marie Kubalakova - Plant
Jarmila Cihalikova - Plant
Zdenka Dubska - Plant
Jan Vrana - Plant
Romana Sperkova - Plant
Hana Simkova - Plant
Melanie Febrer - University of Dundee
Leah Clissold - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Kirsten McLay - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Kuldeep Singh - Supreme Council Of Health
Parveen Chhuneja
Nagendra K. Singh - Plant
Jitendra Khurana - University of Delhi
Eduard Akhunov - Kansas State University
Frederic Choulet - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Adriana Alberti - Genoscope
Valerie Barbe - Genoscope
Patrick Wincker - Genoscope
Hiroyuki Kanamori - Plant
Fuminori Kobayashi - Plant
Takeshi Itoh - Plant
Takashi Matsumoto - Plant
Hiroaki Sakai - Plant
Tsuyoshi Tanaka - Plant
Jianzhong Wu - Plant
Yasunari Ogihara - Yokohama City University
Hirokazu Handa - Plant
P. Ron Maclachlan - University of Saskatchewan
Andrew Sharpe - Natl Res Council Canada, 110 Gymnasium Pl, Saskatoon, SK S7N 0W9, Canada
Darrin Klassen - Natl Res Council Canada, 110 Gymnasium Pl, Saskatoon, SK S7N 0W9, Canada
David Edwards - University of Queensland
Jacqueline Batley - University of Queensland
Sigbjorn Lien - Norwegian Univ Life Sci, Dept Anim & Aquicultural Sci, CIGENE, Arboretvelen 6, N-1432 As, Norway
Burkhard Steuernagel - Norwich Res Pk, Sainsbury Lab, Norwich NR4 7UH, Norfolk, England
Brande Wulff - Norwich Res Pk, Sainsbury Lab, Norwich NR4 7UH, Norfolk, England
Mario Caccamo - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Sarah Ayling - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Ricardo H. Ramirez-Gonzalez - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Bernardo J. Clavijo - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Jonathan Wright - Norwich Res Pk, Genome Anal Ctr, Norwich NR4 7UH, Norfolk, England
Manuel Spannagl - Plant
Mihaela M. Martis - Plant
Martin Mascher - Plant
Jarrod Chapman - Joint Genome Institute
Jesse A. Poland - USDA ARS, Hard Winter Wheat Genet Res Unit, Manhattan, KS 66506 USA
Uwe Scholz - Plant
Kerrie Barry - Joint Genome Institute
Robbie Waugh - James Hutton Institute
Daniel S. Rokhsar - Joint Genome Institute
Gary J. Muehlbauer - University of Minnesota
Nils Stein - Plant
Heidrun Gundlach - Plant
Matthias Zytnicki - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Veronique Jamilloux - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Hadi Quesneville - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Thomas Wicker - University of Zurich
Primetta Faccioli - Consiglio Ric Sperimentaz Agr, Genom Res Ctr, Via San Protaso 302, I-29017 Fjorenzuola Darda, Italy
Moreno Colaiacovo - Consiglio Ric Sperimentaz Agr, Genom Res Ctr, Via San Protaso 302, I-29017 Fjorenzuola Darda, Italy
Antonio Michele Stanca - Consiglio Ric Sperimentaz Agr, Genom Res Ctr, Via San Protaso 302, I-29017 Fjorenzuola Darda, Italy
Hikmet Budak - Sabanci Univ, Biol Sci & Bioengn Program, TR-34956 Istanbul, Turkey
Luigi Cattivelli - Consiglio Ric Sperimentaz Agr, Genom Res Ctr, Via San Protaso 302, I-29017 Fjorenzuola Darda, Italy
Natasha Glover - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Lise Pingault - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Etienne Paux - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Sapna Sharma - Plant
Rudi Appels - Murdoch University
Matthew Bellgard - Murdoch University
Brett Chapman - Murdoch University
Thomas Nussbaumer - Plant
Kai Christian Bader - Plant
Helene Rimbert - Biogemma
Shichen Wang - Kansas State University
Ron Knox - Semiarid Prairie Agr Res Ctr, POB 1030, Swift Current, SK S9H 3X2, Canada
Andrzej Kilian - ACT
Michael Alaux - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Francoise Alfama - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Loic Couderc - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Nicolas Guilhot - Univ Blaise Pascal, INRA, UMR Genet Divers & Ecophysiol Cereals 1095, 5 Chemin Beaulieu, F-63039 Clermont Ferrand, France
Claire Viseux - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Mikael Loaec - INRA Versailles, URGI Res Unit Genom Info UR1164, Route St Cyr, F-78026 Versailles, France
Beat Keller - University of Zurich
Sebastien Praud - Biogemma
Int Wheat Genome Sequencing
Publication Details: Science (American Association for the Advancement of Science), Vol.345(6194), pp.1250091-1250091
Publisher: Amer Assoc Advancement Science
Number of pages: 7
Grant note: 199387 / Norwegian Research Council; Research Council of Norway European Commission's 7th Framework Program SFB924 / Deutsche Forschungsgemeinschaft (DFG); German Research Foundation (DFG) German Federal Ministry of Education and Research (BMBF); Federal Ministry of Education & Research (BMBF)
Identifiers: 9942431708331
Academic Unit: King Abdullah University of Science & Technology
Language: English
Resource Type: Journal article