Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

Wayne Reeve; Elizabeth Drew; Ross Ballard; Vanessa Melino; Rui Tian; Sofie De Meyer; Lambert Brau; Mohamed Ninawi; Hazuki Teshima; Lynne Goodwin; Patrick Chain; Konstantinos Liolios; Amrita Pati; Konstantinos Mavromatis; Natalia Ivanova; Victor Markowitz; Tanja Woyke; Nikos Kyrpides; Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)

doi:10.4056/sigs.4468250

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

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Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565

Wayne Reeve, Elizabeth Drew, Ross Ballard, Vanessa Melino, Rui Tian, Sofie De Meyer, Lambert Brau, Mohamed Ninawi, Hazuki Teshima, Lynne Goodwin, …

Standards in genomic sciences, Vol.9(2), pp.220-231

15/12/2013

DOI: https://doi.org/10.4056/sigs.4468250

PMCID: PMC4062631

PMID: 24976879

Abstract

Alphaproteobacteria

nitrogen fixation

rhizobia

root-nodule bacteria

Short Genome Reports

Rhizobium leguminosarum bv. trifolii SRDI565 (syn. N8-J) is an aerobic, motile, Gram-negative, non-spore-forming rod. SRDI565 was isolated from a nodule recovered from the roots of the annual clover Trifolium subterraneum subsp. subterraneum grown in the greenhouse and inoculated with soil collected from New South Wales, Australia. SRDI565 has a broad host range for nodulation within the clover genus, however N 2 -fixation is sub-optimal with some Trifolium species and ineffective with others. Here we describe the features of R. leguminosarum bv. trifolii strain SRDI565, together with genome sequence information and annotation. The 6,905,599 bp high-quality-draft genome is arranged into 7 scaffolds of 7 contigs, contains 6,750 protein-coding genes and 86 RNA-only encoding genes, and is one of 100 rhizobial genomes sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea -Root Nodule Bacteria (GEBA-RNB) project.

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Title: Genome sequence of the clover-nodulating Rhizobium leguminosarum bv. trifolii strain SRDI565
Creators - without role: Wayne Reeve - University of Western Australia
Elizabeth Drew - South Australian Research and Development Institute, Urrbrae, South Australia
Ross Ballard - South Australian Research and Development Institute, Urrbrae, South Australia
Vanessa Melino - University of Western Australia
Rui Tian - University of Western Australia
Sofie De Meyer - University of Western Australia
Lambert Brau - Deakin University
Mohamed Ninawi - University of Western Australia
Hazuki Teshima - Los Alamos National Laboratory
Lynne Goodwin - Los Alamos National Laboratory
Patrick Chain - Los Alamos National Laboratory
Konstantinos Liolios - Joint Genome Institute
Amrita Pati - Joint Genome Institute
Konstantinos Mavromatis - Joint Genome Institute
Natalia Ivanova - Joint Genome Institute
Victor Markowitz - Lawrence Berkeley National Laboratory
Tanja Woyke - Joint Genome Institute
Nikos Kyrpides - Joint Genome Institute
Lawrence Livermore National Laboratory (LLNL), Livermore, CA (United States)
Publication Details: Standards in genomic sciences, Vol.9(2), pp.220-231
Publisher: Michigan State University
Grant note: DE-AC02-05CH11231; DE-AC52-07NA27344; DE-AC02-06NA25396 / US Department of Energy’s Office of Science, Biological and Environmental Research Program Murdoch University Strategic Research Fund Crop and Plant Research Institute UMU00032 / Centre for Rhizobium Studies
Identifiers: 9941435408331
Academic Unit: King Abdullah University of Science & Technology
Language: English
Resource Type: Journal article