Hologenome analysis of two marine sponges with different microbiomes

Taewoo Ryu; Loqmane Seridi; Lucas Moitinho-Silva; Matthew Oates; Yi Jin Liew; Charalampos Mavromatis; Xiaolei Wang; Annika Haywood; Feras F. Lafi; Marija Kupresanin; Rachid Sougrat; Majed A. Alzahrani; Emily Giles; Yanal Ghosheh; Celia Schunter; Sebastian Baumgarten; Michael L. Berumen; Xin Gao; Manuel Aranda; Sylvain Foret; Julian Gough; Christian R. Voolstra; Ute Hentschel; Timothy Ravasi

doi:10.1186/s12864-016-2501-0

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Hologenome analysis of two marine sponges with different microbiomes

Journal article

Open access

Peer reviewed

Hologenome analysis of two marine sponges with different microbiomes

Taewoo Ryu, Loqmane Seridi, Lucas Moitinho-Silva, Matthew Oates, Yi Jin Liew, Charalampos Mavromatis, Xiaolei Wang, Annika Haywood, Feras F. Lafi, Marija Kupresanin, …

BMC genomics, Vol.17(1), pp.158-158

29/02/2016

DOI: https://doi.org/10.1186/s12864-016-2501-0

PMCID: PMC4772301

PMID: 26926518

Abstract

Biotechnology & Applied Microbiology

Genetics & Heredity

Life Sciences & Biomedicine

Science & Technology

Background: Sponges (Porifera) harbor distinct microbial consortia within their mesohyl interior. We herein analysed the hologenomes of Stylissa carteri and Xestospongia testudinaria, which notably differ in their microbiome content. Results: Our analysis revealed that S. carteri has an expanded repertoire of immunological domains, specifically Scavenger Receptor Cysteine-Rich (SRCR) like domains, compared to X. testudinaria. On the microbial side, metatranscriptome analyses revealed an overrepresentation of potential symbiosis-related domains in X. testudinaria. Conclusions: Our findings provide genomic insights into the molecular mechanisms underlying host-symbiont coevolution and may serve as a roadmap for future hologenome analyses.

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Title: Hologenome analysis of two marine sponges with different microbiomes
Creators - without role: Taewoo Ryu - King Abdullah University of Science and Technology
Loqmane Seridi - King Abdullah University of Science and Technology
Lucas Moitinho-Silva - UNSW Sydney
Matthew Oates - University of Bristol
Yi Jin Liew - King Abdullah University of Science and Technology
Charalampos Mavromatis - King Abdullah University of Science and Technology
Xiaolei Wang - King Abdullah Univ Sci & Technol, Comp Elect & Math Sci & Engn Div, Thuwal 239556900, Saudi Arabia
Annika Haywood - King Abdullah Univ Sci & Technol, Div Biol & Environm Sci & Engn, Thuwal 239556900, Saudi Arabia
Feras F. Lafi - King Abdullah University of Science and Technology
Marija Kupresanin - King Abdullah University of Science and Technology
Rachid Sougrat - King Abdullah University of Science and Technology
Majed A. Alzahrani - King Abdullah University of Science and Technology
Emily Giles - King Abdullah University of Science and Technology
Yanal Ghosheh - King Abdullah University of Science and Technology
Celia Schunter - King Abdullah University of Science and Technology
Sebastian Baumgarten - King Abdullah University of Science and Technology
Michael L. Berumen - King Abdullah University of Science and Technology
Xin Gao - King Abdullah University of Science and Technology
Manuel Aranda - King Abdullah University of Science and Technology
Sylvain Foret - Australian National University
Julian Gough - University of Bristol
Christian R. Voolstra - King Abdullah University of Science and Technology
Ute Hentschel - GEOMAR Helmholtz Centre for Ocean Research Kiel
Timothy Ravasi - King Abdullah University of Science and Technology
Publication Details: BMC genomics, Vol.17(1), pp.158-158
Publisher: Springer Nature
Number of pages: 11
Grant note: BB/N019431/1 / Biotechnology and Biological Sciences Research Council; UK Research & Innovation (UKRI); Biotechnology and Biological Sciences Research Council (BBSRC) BB/N019431/1 / BBSRC; UK Research & Innovation (UKRI); Biotechnology and Biological Sciences Research Council (BBSRC) King Abdullah University of Science and Technology; King Abdullah University of Science & Technology German Excellence Initiative
Identifiers: 9938527408331
Academic Unit: King Abdulaziz University; King Abdullah University of Science & Technology
Language: English
Resource Type: Journal article