Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

David M Geiser; Abdullah M S Al-Hatmi; Takayuki Aoki; Tsutomu Arie; Virgilio Balmas; Irene Barnes; Gary C Bergstrom; Madan K Bhattacharyya; Cheryl L Blomquist; Robert L Bowden; Balázs Brankovics; Daren W Brown; Lester W Burgess; Kathryn Bushley; Mark Busman; José F Cano-Lira; Joseph D Carrillo; Hao-Xun Chang; Chi-Yu Chen; Wanquan Chen; Martin Chilvers; Sofia Chulze; Jeffrey J Coleman; Christina A Cuomo; Z Wilhelm de Beer; G Sybren de Hoog; Johanna Del Castillo-Múnera; Emerson M Del Ponte; Javier Diéguez-Uribeondo; Antonio Di Pietro; Véronique Edel-Hermann; Wade H Elmer; Lynn Epstein; Akif Eskalen; Maria Carmela Esposto; Kathryne L Everts; Sylvia P Fernández-Pavía; Gilvan Ferreira da Silva; Nora A Foroud; Gerda Fourie; Rasmus J N Frandsen; Stanley Freeman; Michael Freitag; Omer Frenkel; Kevin K Fuller; Tatiana Gagkaeva; Donald M Gardiner; Anthony E Glenn; Scott E Gold; Thomas R Gordon; Nancy F Gregory; Marieka Gryzenhout; Josep Guarro; Beth K Gugino; Santiago Gutierrez; Kim E Hammond-Kosack; Linda J Harris; Mónika Homa; Cheng-Fang Hong; László Hornok; Jenn-Wen Huang; Macit Ilkit; Adriaana Jacobs; Karin Jacobs; Cong Jiang; María Del Mar Jiménez-Gasco; Seogchan Kang; Matthew T Kasson; Kemal Kazan; John C Kennell; Hye-Seon Kim; H Corby Kistler; Gretchen A Kuldau; Tomasz Kulik; Oliver Kurzai; Imane Laraba; Matthew H Laurence; Theresa Lee; Yin-Won Lee; Yong-Hwan Lee; John F Leslie; Edward C Y Liew; Lily W Lofton; Antonio F Logrieco; Manuel S López-Berges; Alicia G Luque; Erik Lysøe; Li-Jun Ma; Robert E Marra; Frank N Martin; Sara R May; Susan P McCormick; Chyanna McGee; Jacques F Meis; Quirico Migheli; N M I Mohamed Nor; Michel Monod; Antonio Moretti; Diane Mostert; Giuseppina Mulè; Françoise Munaut; Gary P Munkvold; Paul Nicholson; Marcio Nucci; Kerry O'Donnell; Matias Pasquali; Ludwig H Pfenning; Anna Prigitano; Robert H Proctor; Stéphane Ranque; Stephen A Rehner; Martijn Rep; Gerardo Rodríguez-Alvarado; Lindy Joy Rose; Mitchell G Roth; Carmen Ruiz-Roldán; Amgad A Saleh; Baharuddin Salleh; Hyunkyu Sang; María Mercedes Scandiani; Jonathan Scauflaire; David G Schmale, 3rd; Dylan P G Short; Adnan Šišić; Jason A Smith; Christopher W Smyth; Hokyoung Son; Ellie Spahr; Jason E Stajich; Emma Steenkamp; Christian Steinberg; Rajagopal Subramaniam; Haruhisa Suga; Brett A Summerell; Antonella Susca; Cassandra L Swett; Christopher Toomajian; Terry J Torres-Cruz; Anna M Tortorano; Martin Urban; Lisa J Vaillancourt; Gary E Vallad; Theo A J van der Lee; Dan Vanderpool; Anne D van Diepeningen; Martha M Vaughan; Eduard Venter; Marcele Vermeulen; Paul E Verweij; Altus Viljoen; Cees Waalwijk; Emma C Wallace; Grit Walther; Jie Wang; Todd J Ward; Brian L Wickes; Nathan P Wiederhold; Michael J Wingfield; Ana K M Wood; Jin-Rong Xu; Xiao-Bing Yang; Tapani Yli-Mattila; Sung-Hwan Yun; Latiffah Zakaria; Hao Zhang; Ning Zhang; Sean X Zhang; Xue Zhang

doi:10.1094/PHYTO-08-20-0330-LE

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Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

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Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex

David M Geiser, Abdullah M S Al-Hatmi, Takayuki Aoki, Tsutomu Arie, Virgilio Balmas, Irene Barnes, Gary C Bergstrom, Madan K Bhattacharyya, Cheryl L Blomquist, Robert L Bowden, …

Phytopathology, Vol.111(7), pp.1064-1079

01/07/2021

DOI: https://doi.org/10.1094/PHYTO-08-20-0330-LE

PMID: 33200960

Abstract

Fusarium - genetics

Phylogeny

Plant Diseases

Plants

Scientific communication is facilitated by a data-driven, scientifically sound taxonomy that considers the end-user's needs and established successful practice. In 2013, the community voiced near unanimous support for a concept of that represented a clade comprising all agriculturally and clinically important species, including the species complex (FSSC). Subsequently, this concept was challenged in 2015 by one research group who proposed dividing the genus into seven genera, including the FSSC described as members of the genus , with subsequent justification in 2018 based on claims that the 2013 concept of is polyphyletic. Here, we test this claim and provide a phylogeny based on exonic nucleotide sequences of 19 orthologous protein-coding genes that strongly support the monophyly of including the FSSC. We reassert the practical and scientific argument in support of a genus that includes the FSSC and several other basal lineages, consistent with the longstanding use of this name among plant pathologists, medical mycologists, quarantine officials, regulatory agencies, students, and researchers with a stake in its taxonomy. In recognition of this monophyly, 40 species described as genus were recombined in genus , and nine others were renamed Here the global community voices strong support for the inclusion of the FSSC in , as it remains the best scientific, nomenclatural, and practical taxonomic option available.

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Title: Phylogenomic Analysis of a 55.1-kb 19-Gene Dataset Resolves a Monophyletic Fusarium that Includes the Fusarium solani Species Complex
Creators - without role: David M Geiser - Pennsylvania State University
Abdullah M S Al-Hatmi - Directorate General of Health Services
Takayuki Aoki - Genetic Resources Center
Tsutomu Arie - Tokyo University of Agriculture and Technology
Virgilio Balmas - Studi
Irene Barnes - University of Pretoria
Gary C Bergstrom - Cornell University
Madan K Bhattacharyya - Iowa State University
Cheryl L Blomquist - Plant
Robert L Bowden - Hard Winter Wheat Genetics Research Unit, U.S. Department of Agriculture Agricultural Research Service (USDA-ARS), Manhattan, KS 66506, U.S.A
Balázs Brankovics - Plant
Daren W Brown - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Lester W Burgess - University of Sydney
Kathryn Bushley - University of Minnesota
Mark Busman - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
José F Cano-Lira - Mycology Unit and IISPV, Universitat Rovira i Virgili Medical School, Reus, Spain
Joseph D Carrillo - Gulf Coast Research and Education Center, University of Florida, Wimauma, FL 33598, U.S.A
Hao-Xun Chang - National Taiwan University
Chi-Yu Chen - Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
Wanquan Chen - State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agriculture Sciences, Beijing, People's Republic of China
Martin Chilvers - Michigan State University
Sofia Chulze - National University of Río Cuarto
Jeffrey J Coleman - Auburn University
Christina A Cuomo - Broad Institute
Z Wilhelm de Beer - University of Pretoria
G Sybren de Hoog - Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
Johanna Del Castillo-Múnera - University of California, Davis
Emerson M Del Ponte - Universidade Federal de Viçosa
Javier Diéguez-Uribeondo - Real Jardín Botánico
Antonio Di Pietro - GeneTiCA
Véronique Edel-Hermann - French National Institute for Agriculture, Food, and Environment (INRAE), Dijon, France
Wade H Elmer - Connecticut Agricultural Experiment Station
Lynn Epstein - University of California, Davis
Akif Eskalen - University of California, Davis
Maria Carmela Esposto - Department of Biomedical Sciences for Health, University of Milano, Milan, Italy
Kathryne L Everts - Wye Research and Education Center, University of Maryland, Queenstown, MD 21658, U.S.A
Sylvia P Fernández-Pavía - Universidad Michoacana de San Nicolás de Hidalgo
Gilvan Ferreira da Silva - Embrapa Amazônia Ocidental, Manaus, Brazil
Nora A Foroud - Agriculture and Agri-Food Canada
Gerda Fourie - University of Pretoria
Rasmus J N Frandsen - Technical University of Denmark
Stanley Freeman - Agricultural Research Organization
Michael Freitag - Oregon State University
Omer Frenkel - Agricultural Research Organization
Kevin K Fuller - University of Oklahoma Health Sciences Center
Tatiana Gagkaeva - All-Russian Institute of Plant Protection
Donald M Gardiner - CSIRO Agriculture and Food, St. Lucia, Australia
Anthony E Glenn - Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A
Scott E Gold - Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A
Thomas R Gordon - University of California, Davis
Nancy F Gregory - University of Delaware
Marieka Gryzenhout - University of the Free State
Josep Guarro - Unitat de Microbiologia, Departament de Ciències Mèdiques Bàsiques, Universitat Rovira i Virgili, Reus, Spain
Beth K Gugino - Pennsylvania State University
Santiago Gutierrez - Universidad de León
Kim E Hammond-Kosack - Rothamsted Research
Linda J Harris - Agriculture and Agri-Food Canada
Mónika Homa - University of Szeged
Cheng-Fang Hong - Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
László Hornok - Magyar Agrár- és Élettudományi Egyetem
Jenn-Wen Huang - Department of Plant Pathology, National Chung Hsing University, Taichung, Taiwan
Macit Ilkit - Faculty
Adriaana Jacobs - Plant
Karin Jacobs - Stellenbosch University
Cong Jiang - Agriculture and Forestry University
María Del Mar Jiménez-Gasco - Pennsylvania State University
Seogchan Kang - Pennsylvania State University
Matthew T Kasson - West Virginia University
Kemal Kazan - CSIRO Agriculture and Food, St. Lucia, Australia
John C Kennell - Biology Department, St. Louis University, St. Louis, MO 63101, U.S.A
Hye-Seon Kim - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
H Corby Kistler - University of Minnesota
Gretchen A Kuldau - Pennsylvania State University
Tomasz Kulik - University of Warmia and Mazury in Olsztyn
Oliver Kurzai - Hans Knöll Institute
Imane Laraba - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Matthew H Laurence - Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
Theresa Lee - Rural Development Administration
Yin-Won Lee - Seoul National University
Yong-Hwan Lee - Seoul National University
John F Leslie - Kansas State University
Edward C Y Liew - Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
Lily W Lofton - Toxicology and Mycotoxin Research Unit, USDA-ARS, Athens, GA 30605, U.S.A
Antonio F Logrieco - Institute of Sciences of Food Production
Manuel S López-Berges - GeneTiCA
Alicia G Luque - Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Referencia de Micología, Universidad Nacional de Rosario, Rosario, Argentina
Erik Lysøe - Norwegian Institute of Bioeconomy Research
Li-Jun Ma - University of Massachusetts Amherst
Robert E Marra - Connecticut Agricultural Experiment Station
Frank N Martin - Crop Improvement and Protection Research Unit, ARS-USDA, Salinas, CA 93905, U.S.A
Sara R May - Pennsylvania State University
Susan P McCormick - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Chyanna McGee - Pennsylvania State University
Jacques F Meis - Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
Quirico Migheli - Studi
N M I Mohamed Nor - Universiti Sains Malaysia
Michel Monod - Laboratoire de Mycologie, Service de Dermatologie, Centre Hospitalier Universitaire Vaudois, 1011 Lausanne, Switzerland
Antonio Moretti - Institute of Sciences of Food Production
Diane Mostert - Stellenbosch University
Giuseppina Mulè - Institute of Sciences of Food Production
Françoise Munaut - Brussels, Belgium
Gary P Munkvold - Iowa State University
Paul Nicholson - John Innes Centre
Marcio Nucci - Hospital Universitário, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Brazil
Kerry O'Donnell - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Matias Pasquali - Department of Food, Environmental and Nutritional Sciences, University of Milano, Milan, Italy
Ludwig H Pfenning - Departamento de Fitopatologia, Universidade Federal de Lavras, Lavras, Minas Gerais State, Brazil
Anna Prigitano - Department of Biomedical Sciences for Health, University of Milano, Milan, Italy
Robert H Proctor - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Stéphane Ranque - Aix-Marseille University
Stephen A Rehner - Mycology and Nematology Genetic Diversity and Biology Laboratory, USDA-ARS, Beltsville, MD 20705, U.S.A
Martijn Rep - University of Amsterdam
Gerardo Rodríguez-Alvarado - Universidad Michoacana de San Nicolás de Hidalgo
Lindy Joy Rose - Stellenbosch University
Mitchell G Roth - University of Wisconsin–Madison
Carmen Ruiz-Roldán - GeneTiCA
Amgad A Saleh - King Saud University
Baharuddin Salleh - Universiti Sains Malaysia
Hyunkyu Sang - Chonnam National University
María Mercedes Scandiani - Facultad de Ciencias Bioquímicas y Farmacéuticas, Centro de Referencia de Micología, Universidad Nacional de Rosario, Rosario, Argentina
Jonathan Scauflaire - Haute École Louvain en Hainaut
David G Schmale, 3rd - Virginia Tech
Dylan P G Short - Mate
Adnan Šišić - University of Kassel
Jason A Smith - School of Forest Resources and Conservation, University of Florida, Gainesville, FL 32611, U.S.A
Christopher W Smyth - Binghamton University
Hokyoung Son - Seoul National University
Ellie Spahr - West Virginia University
Jason E Stajich - University of California, Riverside
Emma Steenkamp - University of Pretoria
Christian Steinberg - Institut Agro Dijon
Rajagopal Subramaniam - Agriculture and Agri-Food Canada
Haruhisa Suga - Gifu University
Brett A Summerell - Australian Institute of Botanical Science, Royal Botanic Garden and Domain Trust, Sydney, Australia
Antonella Susca - Institute of Sciences of Food Production
Cassandra L Swett - University of California, Davis
Christopher Toomajian - Kansas State University
Terry J Torres-Cruz - Pennsylvania State University
Anna M Tortorano - Mylan
Martin Urban - Rothamsted Research
Lisa J Vaillancourt - University of Kentucky
Gary E Vallad - Gulf Coast Research and Education Center, University of Florida, Wimauma, FL 33598, U.S.A
Theo A J van der Lee - Plant
Dan Vanderpool - Indiana University Bloomington
Anne D van Diepeningen - Plant
Martha M Vaughan - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Eduard Venter - University of Johannesburg
Marcele Vermeulen - University of the Free State
Paul E Verweij - Department of Medical Mycology and Infectious Diseases, Center of Expertise in Mycology, Radboud University Medical Center, Canisius Wilhelmina Hospital, Nijmegen, The Netherlands
Altus Viljoen - Stellenbosch University
Cees Waalwijk - Plant
Emma C Wallace - Pennsylvania State University
Grit Walther - Hans Knöll Institute
Jie Wang - Lawrence Berkeley National Laboratory
Todd J Ward - Mycotoxin Prevention and Applied Microbiology Research Unit, USDA-ARS, Peoria, IL 61604, U.S.A
Brian L Wickes - Department of Microbiology, Immunology and Molecular Genetics, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A
Nathan P Wiederhold - Department of Pathology, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A
Michael J Wingfield - University of Pretoria
Ana K M Wood - Rothamsted Research
Jin-Rong Xu - Department of Pathology, University of Texas Health Science Center, San Antonio, TX 78229, U.S.A
Xiao-Bing Yang - John Innes Centre
Tapani Yli-Mattila - University of Turku
Sung-Hwan Yun - Soonchunhyang University
Latiffah Zakaria - Universiti Sains Malaysia
Hao Zhang - Institute of Plant Protection
Ning Zhang - University of New Brunswick
Sean X Zhang - Johns Hopkins University
Xue Zhang - Agriculture and Forestry University
Publication Details: Phytopathology, Vol.111(7), pp.1064-1079
Identifiers: 9948169408331
Academic Unit: King Saud University
Language: English
Resource Type: Journal article