The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Leho Tedersoo; Vladimir Mikryukov; Sten Anslan; Mohammad Bahram; Abdul Nasir Khalid; Adriana Corrales; Ahto Agan; Aida-M Vasco-Palacios; Alessandro Saitta; Alexandre Antonelli; Andrea C. Rinaldi; Annemieke Verbeken; Bobby P. Sulistyo; Boris Tamgnoue; Brendan R. Furneaux; Camila Duarte Ritter; Casper Nyamukondiwa; Cathy Sharp; Cesar Marin; D. Q. Dai; Daniyal Gohar; Dipon Sharmah; Elisabeth Machteld Biersma; Erin K. Cameron; Eske De Crop; Eveli Otsing; Evgeny A. Davydov; Felipe E. Albornoz; Francis Q. Brearley; Franz Buegger; Genevieve Gates; Geoffrey Zahn; Gregory Bonito; Indrek Hiiesalu; Inga Hiiesalu; Irma Zettur; Isabel C. Barrio; Jaan Pärn; Jacob Heilmann-Clausen; Jelena Ankuda; John Y. Kupagme; Joosep Sarapuu; Jose G. Macia-Vicente; Joseph Djeugap Fovo; Jozsef Geml; Juha M. Alatalo; Julieta Alvarez-Manjarrez; Jutamart Monkai; Kadri Pöldmaa; Kadri Runnel; Kalev Adamson; Kari A. Brathen; Karin Pritsch; Kassim, I Tchan; Kestutis Armolaitis; Kevin D. Hyde; Kevin K. Newsham; Kristel Panksep; Lateef A. Adebola; Louis J. Lamit; Malka Saba; Marcela E. da Silva Caceres; Maria Tuomi; Marieka Gryzenhout; Marijn Bauters; Miklos Balint; Nalin Wijayawardene; Niloufar Hagh-Doust; Nourou S. Yorou; Olavi Kurina; Peter E. Mortimer; Peter Meidl; R. Henrik Nilsson; Rasmus Puusepp; Rebeca Casique-Valdes; Rein Drenkhan; Roberto Garibay-Orijel; Roberto Godoy; Saleh Alfarraj; Saleh Rahimlou; Sergei Polme; Sergey, V Dudov; Sunil Mundra; Talaat Ahmed; Tarquin Netherway; Terry W. Henkel; Tomas Roslin; Vladimir E. Fedosov; Vladimir G. Onipchenko; W. A. Erandi Yasanthika; Young Woon Lim; Meike Piepenbring; Darta Klavina; Urmas Koljalg; Kessy Abarenkov; Naturvetenskapliga fakulteten

doi:10.1007/s13225-021-00493-7

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The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Journal article

Peer reviewed

The Global Soil Mycobiome consortium dataset for boosting fungal diversity research

Leho Tedersoo, Vladimir Mikryukov, Sten Anslan, Mohammad Bahram, Abdul Nasir Khalid, Adriana Corrales, Ahto Agan, Aida-M Vasco-Palacios, Alessandro Saitta, Alexandre Antonelli, …

Fungal diversity, Vol.111(1), pp.573-588

2021

DOI: https://doi.org/10.1007/s13225-021-00493-7

Abstract

Biological Sciences

Biologiska vetenskaper

Fungal richness

Global dataset

Microbiology

Mikrobiologi

Natural Sciences

Naturvetenskap

PacBio sequencing

Soil fungi

Fungi are highly important biotic components of terrestrial ecosystems, but we still have a very limited understanding about their diversity and distribution. This data article releases a global soil fungal dataset of the Global Soil Mycobiome consortium (GSMc) to boost further research in fungal diversity, biogeography and macroecology. The dataset comprises 722,682 fungal operational taxonomic units (OTUs) derived from PacBio sequencing of full-length ITS and 18S-V9 variable regions from 3200 plots in 108 countries on all continents. The plots are supplied with geographical and edaphic metadata. The OTUs are taxonomically and functionally assigned to guilds and other functional groups. The entire dataset has been corrected by excluding chimeras, index-switch artefacts and potential contamination. The dataset is more inclusive in terms of geographical breadth and phylogenetic diversity of fungi than previously published data. The GSMc dataset is available over the PlutoF repository.

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Title: The Global Soil Mycobiome consortium dataset for boosting fungal diversity research
Creators - without role: Leho Tedersoo - University of Tartu
Vladimir Mikryukov - University of Tartu
Sten Anslan - University of Tartu
Mohammad Bahram - Swedish University of Agricultural Sciences
Abdul Nasir Khalid - University of the Punjab
Adriana Corrales - Universidad del Rosario
Ahto Agan - University of Tartu
Aida-M Vasco-Palacios - Universidad de Antioquia
Alessandro Saitta - University of Palermo
Alexandre Antonelli - Royal Botanic Gardens, Kew
Andrea C. Rinaldi - University of Cagliari
Annemieke Verbeken - Ghent University
Bobby P. Sulistyo - Indonesia International Institute for Life Sciences
Boris Tamgnoue - Université de Dschang
Brendan R. Furneaux - Uppsala University
Camila Duarte Ritter - University of Duisburg-Essen
Casper Nyamukondiwa - Botswana International University of Science and Technology
Cathy Sharp - Nat Hist Museum Zimbabwe, Bulawayo, Zimbabwe
Cesar Marin - Czech Academy of Sciences, Institute of Botany
D. Q. Dai - Qujing Normal University
Daniyal Gohar - University of Tartu
Dipon Sharmah - Pondicherry University
Elisabeth Machteld Biersma - British Antarctic Survey
Erin K. Cameron - Saint Mary's University
Eske De Crop - Ghent University
Eveli Otsing - University of Tartu
Evgeny A. Davydov - Altai State University
Felipe E. Albornoz - CSIRO Land and Water
Francis Q. Brearley - Manchester Metropolitan University
Franz Buegger - Helmholtz Zentrum München
Genevieve Gates - Tasmanian Inst Agr, Hobart, Tas, Australia
Geoffrey Zahn - Utah Valley University
Gregory Bonito - Michigan State University
Indrek Hiiesalu - University of Tartu
Inga Hiiesalu - University of Tartu
Irma Zettur - University of Tartu
Isabel C. Barrio - Agricultural University of Iceland
Jaan Pärn - University of Tartu
Jacob Heilmann-Clausen - University of Copenhagen
Jelena Ankuda - Lithuanian Research Centre for Agriculture and Forestry
John Y. Kupagme - University of Tartu
Joosep Sarapuu - University of Tartu
Jose G. Macia-Vicente - Wageningen University & Research
Joseph Djeugap Fovo - Université de Dschang
Jozsef Geml - Eszterhazy Karoly Catholic University
Juha M. Alatalo - Qatar University
Julieta Alvarez-Manjarrez - Universidad Nacional Autónoma de México
Jutamart Monkai - Mae Fah Luang University
Kadri Pöldmaa - University of Tartu
Kadri Runnel - University of Tartu
Kalev Adamson - Estonian University of Life Sciences
Kari A. Brathen - UiT The Arctic University of Norway
Karin Pritsch - Helmholtz Zentrum München
Kassim, I Tchan - Université de Parakou
Kestutis Armolaitis - Lithuanian Research Centre for Agriculture and Forestry
Kevin D. Hyde - Mae Fah Luang University
Kevin K. Newsham - British Antarctic Survey
Kristel Panksep - Estonian University of Life Sciences
Lateef A. Adebola - University of Ilorin
Louis J. Lamit - Syracuse University
Malka Saba - Quaid-i-Azam University
Marcela E. da Silva Caceres - Universidade Federal de Sergipe
Maria Tuomi - UiT The Arctic University of Norway
Marieka Gryzenhout - University of the Free State
Marijn Bauters - Ghent University
Miklos Balint - LOEWE Centre for Translational Biodiversity Genomics
Nalin Wijayawardene - Qujing Normal University
Niloufar Hagh-Doust - University of Tartu
Nourou S. Yorou - Université de Parakou
Olavi Kurina - Estonian University of Life Sciences
Peter E. Mortimer - Kunming Institute of Botany
Peter Meidl - Uppsala University
R. Henrik Nilsson - University of Gothenburg
Rasmus Puusepp - University of Tartu
Rebeca Casique-Valdes - Autonomous University of Coahuila
Rein Drenkhan - Estonian University of Life Sciences
Roberto Garibay-Orijel - Universidad Nacional Autónoma de México
Roberto Godoy - Austral University of Chile
Saleh Alfarraj - King Saud University
Saleh Rahimlou - University of Tartu
Sergei Polme - University of Tartu
Sergey, V Dudov - Lomonosov Moscow State University
Sunil Mundra - United Arab Emirates University
Talaat Ahmed - Qatar University
Tarquin Netherway - Swedish University of Agricultural Sciences
Terry W. Henkel - Humboldt State University
Tomas Roslin - Swedish University of Agricultural Sciences
Vladimir E. Fedosov - Lomonosov Moscow State University
Vladimir G. Onipchenko - Lomonosov Moscow State University
W. A. Erandi Yasanthika - Mae Fah Luang University
Young Woon Lim - Seoul National University
Meike Piepenbring - Goethe University Frankfurt
Darta Klavina - Latvian State Forest Research Institute "Silava"
Urmas Koljalg - University of Tartu
Kessy Abarenkov - University of Tartu
Naturvetenskapliga fakulteten
Publication Details: Fungal diversity, Vol.111(1), pp.573-588
Identifiers: 9946173408331
Academic Unit: King Saud University
Language: English
Resource Type: Journal article